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// Copyright (C) 2004-2006 The Trustees of Indiana University.
// Copyright (C) 2007 Douglas Gregor <doug.gregor@gmail.com>
// Copyright (C) 2007 Matthias Troyer <troyer@boost-consulting.com>
// Use, modification and distribution is subject to the Boost Software
// License, Version 1.0. (See accompanying file LICENSE_1_0.txt or copy at
// http://www.boost.org/LICENSE_1_0.txt)
// Authors: Douglas Gregor
// Andrew Lumsdaine
// Matthias Troyer
#include <boost/graph/use_mpi.hpp>
#include <boost/graph/distributed/mpi_process_group.hpp>
#include <boost/mpi/environment.hpp>
#include <boost/lexical_cast.hpp>
#include <memory>
#include <algorithm>
//#define DEBUG 1
//#define MAX_BATCHES 1500
#define PREALLOCATE_BATCHES 250
// 500 is a better setting for PREALLOCATE_BATCHES if you're not using process
// subgroups and are building 64-bit binaries. 250 allows all the CTest
// tests to pass in both 32 and 64-bit modes. If you create multiple process
// groups with PREALLOCATE_BATCHES at a reasonable level in 32-bit mode you
// _will_ run out of memory and get "malloc failed" errors
//#define NO_ISEND_BATCHES
//#define NO_IMMEDIATE_PROCESSING
//#define NO_SPLIT_BATCHES
#define IRECV_BATCH
// we cannot keep track of how many we received if we do not process them
#ifdef NO_IMMEDIATE_PROCESSING
#undef IRECV_BATCH
#endif
#ifdef DEBUG
# include <iostream>
#endif // DEBUG
namespace boost { namespace graph { namespace distributed {
struct mpi_process_group::deallocate_block
{
explicit deallocate_block(blocks_type* blocks) : blocks(blocks) { }
void operator()(int* block_num)
{
block_type* block = (*blocks)[*block_num];
// Mark this block as inactive
(*blocks)[*block_num] = 0;
#ifdef DEBUG
fprintf(stderr, "Processor %i deallocated block #%i\n",
boost::mpi::communicator().rank(), *block_num);
#endif
// Delete the block and its block number
delete block_num;
delete block;
}
private:
blocks_type* blocks;
};
mpi_process_group::impl::incoming_messages::incoming_messages()
{
next_header.push_back(headers.begin());
}
mpi_process_group::impl::impl(std::size_t num_headers, std::size_t buffer_sz,
communicator_type parent_comm)
: comm(parent_comm, boost::mpi::comm_duplicate),
oob_reply_comm(parent_comm, boost::mpi::comm_duplicate),
allocated_tags(boost::mpi::environment::max_tag())
{
max_sent=0;
max_received=0;
int n = comm.size();
outgoing.resize(n);
incoming.resize(n);
// no synchronization stage means -1
// to keep the convention
synchronizing_stage.resize(n,-1);
number_sent_batches.resize(n);
number_received_batches.resize(n);
trigger_context = trc_none;
processing_batches = 0;
// Allocator a placeholder block "0"
blocks.push_back(new block_type);
synchronizing = false;
set_batch_size(num_headers,buffer_sz);
for (int i = 0; i < n; ++i) {
incoming[i].next_header.front() = incoming[i].headers.end();
outgoing[i].buffer.reserve(batch_message_size);
}
#ifdef PREALLOCATE_BATCHES
batch_pool.resize(PREALLOCATE_BATCHES);
for (std::size_t i = 0 ; i < batch_pool.size(); ++i) {
batch_pool[i].buffer.reserve(batch_message_size);
batch_pool[i].request=MPI_REQUEST_NULL;
free_batches.push(i);
}
#endif
}
void mpi_process_group::impl::set_batch_size(std::size_t header_num, std::size_t buffer_sz)
{
batch_header_number = header_num;
batch_buffer_size = buffer_sz;
// determine batch message size by serializing the largest possible batch
outgoing_messages msg;
msg.headers.resize(batch_header_number);
msg.buffer.resize(batch_buffer_size);
boost::mpi::packed_oarchive oa(comm);
oa << const_cast<const outgoing_messages&>(msg);
batch_message_size = oa.size();
}
mpi_process_group::impl::~impl()
{
// Delete the placeholder "0" block
delete blocks.front();
if (!boost::mpi::environment::finalized())
for (std::vector<MPI_Request>::iterator it=requests.begin();
it != requests.end();++it)
MPI_Cancel(&(*it));
}
namespace detail {
// global batch handlers
void handle_batch (mpi_process_group const& self, int source, int,
mpi_process_group::outgoing_messages& batch,bool out_of_band)
{
#ifdef DEBUG
std::cerr << "Processing batch trigger\n";
std::cerr << "BATCH: " << process_id(self) << " <- " << source << " ("
<< batch.headers.size() << " headers, "
<< batch.buffer.size() << " bytes)"
<< std::endl;
#endif
// If we are not synchronizing, then this must be an early receive
trigger_receive_context old_context = self.impl_->trigger_context;
if (self.impl_->trigger_context != trc_in_synchronization)
self.impl_->trigger_context = trc_early_receive;
// Receive the batched messages
self.receive_batch(source,batch);
// Restore the previous context
self.impl_->trigger_context = old_context;
}
// synchronization handler
void handle_sync (mpi_process_group const& self, int source, int tag, int val,
bool)
{
// increment the stage for the source
std::size_t stage = static_cast<std::size_t>(
++self.impl_->synchronizing_stage[source]);
assert(source != process_id(self));
#ifdef DEBUG
std::ostringstream out;
out << process_id(self) << ": handle_sync from " << source
<< " (stage = " << self.impl_->synchronizing_stage[source] << ")\n";
std::cerr << out.str();
#endif
// record how many still have messages to be sent
if (self.impl_->synchronizing_unfinished.size()<=stage) {
assert(self.impl_->synchronizing_unfinished.size() == stage);
self.impl_->synchronizing_unfinished.push_back(val >= 0 ? 1 : 0);
}
else
self.impl_->synchronizing_unfinished[stage]+=(val >= 0 ? 1 : 0);
// record how many are in that stage
if (self.impl_->processors_synchronizing_stage.size()<=stage) {
assert(self.impl_->processors_synchronizing_stage.size() == stage);
self.impl_->processors_synchronizing_stage.push_back(1);
}
else
++self.impl_->processors_synchronizing_stage[stage];
// subtract how many batches we were supposed to receive
if (val>0)
self.impl_->number_received_batches[source] -= val;
}
}
mpi_process_group::mpi_process_group(communicator_type parent_comm)
{
// 64K messages and 1MB buffer turned out to be a reasonable choice
impl_.reset(new impl(64*1024,1024*1024,parent_comm));
#ifndef IRECV_BATCH
global_trigger<outgoing_messages>(msg_batch,&detail::handle_batch);
#else // use irecv version by providing a maximum buffer size
global_trigger<outgoing_messages>(msg_batch,&detail::handle_batch,
impl_->batch_message_size);
#endif
global_trigger<outgoing_messages>(msg_large_batch,&detail::handle_batch);
global_trigger<int>(msg_synchronizing,&detail::handle_sync);
rank = impl_->comm.rank();
size = impl_->comm.size();
#ifdef SEND_OOB_BSEND
// let us try with a default bufferr size of 16 MB
if (!message_buffer_size())
set_message_buffer_size(16*1024*1024);
#endif
}
mpi_process_group::mpi_process_group(std::size_t h, std::size_t sz,
communicator_type parent_comm)
{
impl_.reset(new impl(h,sz,parent_comm));
#ifndef IRECV_BATCH
global_trigger<outgoing_messages>(msg_batch,&detail::handle_batch);
#else // use irecv version by providing a maximum buffer size
global_trigger<outgoing_messages>(msg_batch,&detail::handle_batch,
impl_->batch_message_size);
#endif
global_trigger<outgoing_messages>(msg_large_batch,&detail::handle_batch);
global_trigger<int>(msg_synchronizing,&detail::handle_sync);
rank = impl_->comm.rank();
size = impl_->comm.size();
#ifdef SEND_OOB_BSEND
// let us try with a default bufferr size of 16 MB
if (!message_buffer_size())
set_message_buffer_size(16*1024*1024);
#endif
}
mpi_process_group::mpi_process_group(const mpi_process_group& other,
const receiver_type& handler, bool)
: impl_(other.impl_)
{
rank = impl_->comm.rank();
size = impl_->comm.size();
replace_handler(handler);
}
mpi_process_group::mpi_process_group(const mpi_process_group& other,
attach_distributed_object, bool)
: impl_(other.impl_)
{
rank = impl_->comm.rank();
size = impl_->comm.size();
allocate_block();
for (std::size_t i = 0; i < impl_->incoming.size(); ++i) {
if (my_block_number() >= (int)impl_->incoming[i].next_header.size()) {
impl_->incoming[i].next_header
.push_back(impl_->incoming[i].headers.begin());
} else {
impl_->incoming[i].next_header[my_block_number()] =
impl_->incoming[i].headers.begin();
}
#ifdef DEBUG
if (process_id(*this) == 0) {
std::cerr << "Allocated tag block " << my_block_number() << std::endl;
}
#endif
}
}
mpi_process_group::~mpi_process_group() {
/*
std::string msg = boost::lexical_cast<std::string>(process_id(*this)) + " " +
boost::lexical_cast<std::string>(impl_->max_received) + " " +
boost::lexical_cast<std::string>(impl_->max_sent) + "\n";
std::cerr << msg << "\n";
*/
}
mpi_process_group::communicator_type communicator(const mpi_process_group& pg)
{ return pg.impl_->comm; }
void
mpi_process_group::replace_handler(const receiver_type& handler,
bool out_of_band_receive)
{
make_distributed_object();
// Attach the receive handler
impl_->blocks[my_block_number()]->on_receive = handler;
}
void
mpi_process_group::make_distributed_object()
{
if (my_block_number() == 0) {
allocate_block();
for (std::size_t i = 0; i < impl_->incoming.size(); ++i) {
if (my_block_number() >= (int)impl_->incoming[i].next_header.size()) {
impl_->incoming[i].next_header
.push_back(impl_->incoming[i].headers.begin());
} else {
impl_->incoming[i].next_header[my_block_number()] =
impl_->incoming[i].headers.begin();
}
#ifdef DEBUG
if (process_id(*this) == 0) {
std::cerr << "Allocated tag block " << my_block_number() << std::endl;
}
#endif
}
} else {
// Clear out the existing triggers
std::vector<shared_ptr<trigger_base> >()
.swap(impl_->blocks[my_block_number()]->triggers);
}
// Clear out the receive handler
impl_->blocks[my_block_number()]->on_receive = 0;
}
void
mpi_process_group::
replace_on_synchronize_handler(const on_synchronize_event_type& handler)
{
if (my_block_number() > 0)
impl_->blocks[my_block_number()]->on_synchronize = handler;
}
int mpi_process_group::allocate_block(bool out_of_band_receive)
{
assert(!block_num);
block_iterator i = impl_->blocks.begin();
while (i != impl_->blocks.end() && *i) ++i;
if (i == impl_->blocks.end()) {
impl_->blocks.push_back(new block_type());
i = impl_->blocks.end() - 1;
} else {
*i = new block_type();
}
block_num.reset(new int(i - impl_->blocks.begin()),
deallocate_block(&impl_->blocks));
#ifdef DEBUG
fprintf(stderr,
"Processor %i allocated block #%i\n", process_id(*this), *block_num);
#endif
return *block_num;
}
bool mpi_process_group::maybe_emit_receive(int process, int encoded_tag) const
{
std::pair<int, int> decoded = decode_tag(encoded_tag);
assert (decoded.first < static_cast<int>(impl_->blocks.size()));
block_type* block = impl_->blocks[decoded.first];
if (!block) {
std::cerr << "Received message from process " << process << " with tag "
<< decoded.second << " for non-active block "
<< decoded.first << std::endl;
std::cerr << "Active blocks are: ";
for (std::size_t i = 0; i < impl_->blocks.size(); ++i)
if (impl_->blocks[i])
std::cerr << i << ' ';
std::cerr << std::endl;
assert(block);
}
if (decoded.second < static_cast<int>(block->triggers.size())
&& block->triggers[decoded.second]) {
// We have a trigger for this message; use it
trigger_receive_context old_context = impl_->trigger_context;
impl_->trigger_context = trc_out_of_band;
block->triggers[decoded.second]->receive(*this, process, decoded.second,
impl_->trigger_context,
decoded.first);
impl_->trigger_context = old_context;
}
else
return false;
// We receives the message above
return true;
}
bool mpi_process_group::emit_receive(int process, int encoded_tag) const
{
std::pair<int, int> decoded = decode_tag(encoded_tag);
if (decoded.first >= static_cast<int>(impl_->blocks.size()))
// This must be an out-of-band message destined for
// send_oob_with_reply; ignore it.
return false;
// Find the block that will receive this message
block_type* block = impl_->blocks[decoded.first];
assert(block);
if (decoded.second < static_cast<int>(block->triggers.size())
&& block->triggers[decoded.second])
// We have a trigger for this message; use it
block->triggers[decoded.second]->receive(*this,process, decoded.second,
impl_->trigger_context);
else if (block->on_receive)
// Fall back to the normal message handler
block->on_receive(process, decoded.second);
else
// There was no handler for this message
return false;
// The message was handled above
return true;
}
void mpi_process_group::emit_on_synchronize() const
{
for (block_iterator i = impl_->blocks.begin(); i != impl_->blocks.end(); ++i)
if (*i && (*i)->on_synchronize) (*i)->on_synchronize();
}
optional<std::pair<mpi_process_group::process_id_type, int> >
mpi_process_group::probe() const
{
#ifdef DEBUG
std::cerr << "PROBE: " << process_id(*this) << ", tag block = "
<< my_block_number() << std::endl;
#endif
typedef std::pair<process_id_type, int> result_type;
int tag_block = my_block_number();
for (std::size_t source = 0; source < impl_->incoming.size(); ++source) {
impl::incoming_messages& incoming = impl_->incoming[source];
std::vector<impl::message_header>::iterator& i =
incoming.next_header[tag_block];
std::vector<impl::message_header>::iterator end = incoming.headers.end();
while (i != end) {
if (i->tag != -1 && decode_tag(i->tag).first == my_block_number()) {
#ifdef DEBUG
std::cerr << "PROBE: " << process_id(*this) << " <- " << source
<< ", block = " << my_block_number() << ", tag = "
<< decode_tag(i->tag).second << ", bytes = " << i->bytes
<< std::endl;
#endif
return result_type(source, decode_tag(i->tag).second);
}
++i;
}
}
return optional<result_type>();
}
void
mpi_process_group::maybe_send_batch(process_id_type dest) const
{
#ifndef NO_SPLIT_BATCHES
impl::outgoing_messages& outgoing = impl_->outgoing[dest];
if (outgoing.buffer.size() >= impl_->batch_buffer_size ||
outgoing.headers.size() >= impl_->batch_header_number) {
// we are full and need to send
outgoing_messages batch;
batch.buffer.reserve(impl_->batch_buffer_size);
batch.swap(outgoing);
if (batch.buffer.size() >= impl_->batch_buffer_size
&& batch.headers.size()>1 ) {
// we are too large, keep the last message in the outgoing buffer
std::copy(batch.buffer.begin()+batch.headers.back().offset,
batch.buffer.end(),std::back_inserter(outgoing.buffer));
batch.buffer.resize(batch.headers.back().offset);
outgoing.headers.push_back(batch.headers.back());
batch.headers.pop_back();
outgoing.headers.front().offset=0;
}
send_batch(dest,batch);
}
#endif
}
void
mpi_process_group::send_batch(process_id_type dest) const
{
impl::outgoing_messages& outgoing = impl_->outgoing[dest];
if (outgoing.headers.size()) {
// need to copy to avoid race conditions
outgoing_messages batch;
batch.buffer.reserve(impl_->batch_buffer_size);
batch.swap(outgoing);
send_batch(dest,batch);
}
}
void
mpi_process_group::send_batch(process_id_type dest,
outgoing_messages& outgoing) const
{
impl_->free_sent_batches();
process_id_type id = process_id(*this);
// clear the batch
#ifdef DEBUG
std::cerr << "Sending batch: " << id << " -> " << dest << std::endl;
#endif
// we increment the number of batches sent
++impl_->number_sent_batches[dest];
// and send the batch
assert(outgoing.headers.size() <= impl_->batch_header_number);
if (id != dest) {
#ifdef NO_ISEND_BATCHES
impl::batch_request req;
#else
#ifdef PREALLOCATE_BATCHES
while (impl_->free_batches.empty()) {
impl_->free_sent_batches();
poll();
}
impl::batch_request& req = impl_->batch_pool[impl_->free_batches.top()];
impl_->free_batches.pop();
#else
impl_->sent_batches.push_back(impl::batch_request());
impl::batch_request& req = impl_->sent_batches.back();
#endif
#endif
boost::mpi::packed_oarchive oa(impl_->comm,req.buffer);
oa << outgoing;
int tag = msg_batch;
#ifdef IRECV_BATCH
if (oa.size() > impl_->batch_message_size)
tag = msg_large_batch;
#endif
#ifndef NDEBUG // Prevent uninitialized variable warning with NDEBUG is on
int result =
#endif // !NDEBUG
MPI_Isend(const_cast<void*>(oa.address()), oa.size(),
MPI_PACKED, dest, tag, impl_->comm,
&req.request);
assert(result == MPI_SUCCESS);
impl_->max_sent = (std::max)(impl_->max_sent,impl_->sent_batches.size());
#ifdef NO_ISEND_BATCHES
int done=0;
do {
poll();
MPI_Test(&req.request,&done,MPI_STATUS_IGNORE);
} while (!done);
#else
#ifdef MAX_BATCHES
while (impl_->sent_batches.size() >= MAX_BATCHES-1) {
impl_->free_sent_batches();
poll();
}
#endif
#endif
}
else
receive_batch(id,outgoing);
}
void mpi_process_group::process_batch(int source) const
{
bool processing_from_queue = !impl_->new_batches.empty();
impl_->processing_batches++;
typedef std::vector<impl::message_header>::iterator iterator;
impl::incoming_messages& incoming = impl_->incoming[source];
// Set up the iterators pointing to the next header in each block
for (std::size_t i = 0; i < incoming.next_header.size(); ++i)
incoming.next_header[i] = incoming.headers.begin();
buffer_type remaining_buffer;
std::vector<impl::message_header> remaining_headers;
iterator end = incoming.headers.end();
for (iterator i = incoming.headers.begin(); i != end; ++i) {
// This this message has already been received, skip it
if (i->tag == -1)
continue;
#ifdef BATCH_DEBUG
std::cerr << process_id(*this) << ": emit_receive(" << source << ", "
<< decode_tag(i->tag).first << ":" << decode_tag(i->tag).second
<< ")\n";
#endif
if (!emit_receive(source, i->tag)) {
#ifdef BATCH_DEBUG
std::cerr << process_id(*this) << ": keeping message # "
<< remaining_headers.size() << " from " << source << " ("
<< decode_tag(i->tag).first << ":"
<< decode_tag(i->tag).second << ", "
<< i->bytes << " bytes)\n";
#endif
// Hold on to this message until the next stage
remaining_headers.push_back(*i);
remaining_headers.back().offset = remaining_buffer.size();
remaining_buffer.insert(remaining_buffer.end(),
&incoming.buffer[i->offset],
&incoming.buffer[i->offset] + i->bytes);
}
}
// Swap the remaining messages into the "incoming" set.
incoming.headers.swap(remaining_headers);
incoming.buffer.swap(remaining_buffer);
// Set up the iterators pointing to the next header in each block
for (std::size_t i = 0; i < incoming.next_header.size(); ++i)
incoming.next_header[i] = incoming.headers.begin();
impl_->processing_batches--;
if (!processing_from_queue)
while (!impl_->new_batches.empty()) {
receive_batch(impl_->new_batches.front().first,
impl_->new_batches.front().second);
impl_->new_batches.pop();
}
}
void mpi_process_group::receive_batch(process_id_type source,
outgoing_messages& new_messages) const
{
impl_->free_sent_batches();
if(!impl_->processing_batches) {
// increase the number of received batches
++impl_->number_received_batches[source];
// and receive the batch
impl::incoming_messages& incoming = impl_->incoming[source];
typedef std::vector<impl::message_header>::iterator iterator;
iterator end = new_messages.headers.end();
for (iterator i = new_messages.headers.begin(); i != end; ++i) {
incoming.headers.push_back(*i);
incoming.headers.back().offset = incoming.buffer.size();
incoming.buffer.insert(incoming.buffer.end(),
&new_messages.buffer[i->offset],
&new_messages.buffer[i->offset] + i->bytes);
}
// Set up the iterators pointing to the next header in each block
for (std::size_t i = 0; i < incoming.next_header.size(); ++i)
incoming.next_header[i] = incoming.headers.begin();
#ifndef NO_IMMEDIATE_PROCESSING
process_batch(source);
#endif
}
else {
#ifdef DEBUG
std::cerr << "Pushing incoming message batch onto queue since we are already processing a batch.\n";
#endif
// use swap to avoid copying
impl_->new_batches.push(std::make_pair(int(source),outgoing_messages()));
impl_->new_batches.back().second.swap(new_messages);
impl_->max_received = (std::max)(impl_->max_received,impl_->new_batches.size());
}
}
void mpi_process_group::pack_headers() const
{
for (process_id_type other = 0; other < num_processes(*this); ++other) {
typedef std::vector<impl::message_header>::iterator iterator;
impl::incoming_messages& incoming = impl_->incoming[other];
buffer_type remaining_buffer;
std::vector<impl::message_header> remaining_headers;
iterator end = incoming.headers.end();
for (iterator i = incoming.headers.begin(); i != end; ++i) {
if (i->tag == -1)
continue;
// Hold on to this message until the next stage
remaining_headers.push_back(*i);
remaining_headers.back().offset = remaining_buffer.size();
remaining_buffer.insert(remaining_buffer.end(),
&incoming.buffer[i->offset],
&incoming.buffer[i->offset] + i->bytes);
}
// Swap the remaining messages into the "incoming" set.
incoming.headers.swap(remaining_headers);
incoming.buffer.swap(remaining_buffer);
// Set up the iterators pointing to the next header in each block
for (std::size_t i = 0; i < incoming.next_header.size(); ++i)
incoming.next_header[i] = incoming.headers.begin();
}
}
void mpi_process_group::receive_batch(boost::mpi::status& status) const
{
//std::cerr << "Handling batch\n";
outgoing_messages batch;
//impl_->comm.recv(status.source(),status.tag(),batch);
//receive_oob(*this,status.source(),msg_batch,batch);
// Determine how big the receive buffer should be
#if BOOST_VERSION >= 103600
int size = status.count<boost::mpi::packed>().get();
#else
int size;
MPI_Status mpi_status(status);
MPI_Get_count(&mpi_status, MPI_PACKED, &size);
#endif
// Allocate the receive buffer
boost::mpi::packed_iarchive in(impl_->comm,size);
// Receive the message data
MPI_Recv(in.address(), size, MPI_PACKED,
status.source(), status.tag(),
impl_->comm, MPI_STATUS_IGNORE);
// Unpack the message data
in >> batch;
receive_batch(status.source(),batch);
}
std::pair<boost::mpi::communicator, int>
mpi_process_group::actual_communicator_and_tag(int tag, int block) const
{
if (tag >= max_tags * static_cast<int>(impl_->blocks.size()))
// Use the out-of-band reply communicator
return std::make_pair(impl_->oob_reply_comm, tag);
else
// Use the normal communicator and translate the tag
return std::make_pair(impl_->comm,
encode_tag(block == -1? my_block_number() : block,
tag));
}
void mpi_process_group::synchronize() const
{
// Don't synchronize if we've already finished
if (boost::mpi::environment::finalized())
return;
#ifdef DEBUG
std::cerr << "SYNC: " << process_id(*this) << std::endl;
#endif
emit_on_synchronize();
process_id_type id = process_id(*this); // Our rank
process_size_type p = num_processes(*this); // The number of processes
// Pack the remaining incoming messages into the beginning of the
// buffers, so that we can receive new messages in this
// synchronization step without losing those messages that have not
// yet been received.
pack_headers();
impl_->synchronizing_stage[id] = -1;
int stage=-1;
bool no_new_messages = false;
while (true) {
++stage;
#ifdef DEBUG
std::cerr << "SYNC: " << id << " starting stage " << (stage+1) << ".\n";
#endif
// Tell everyone that we are synchronizing. Note: we use MPI_Isend since
// we absolutely cannot have any of these operations blocking.
// increment the stage for the source
++impl_->synchronizing_stage[id];
if (impl_->synchronizing_stage[id] != stage)
std::cerr << "Expected stage " << stage << ", got " << impl_->synchronizing_stage[id] << std::endl;
assert(impl_->synchronizing_stage[id]==stage);
// record how many still have messages to be sent
if (static_cast<int>(impl_->synchronizing_unfinished.size())<=stage) {
assert(static_cast<int>(impl_->synchronizing_unfinished.size()) == stage);
impl_->synchronizing_unfinished.push_back(no_new_messages ? 0 : 1);
}
else
impl_->synchronizing_unfinished[stage]+=(no_new_messages ? 0 : 1);
// record how many are in that stage
if (static_cast<int>(impl_->processors_synchronizing_stage.size())<=stage) {
assert(static_cast<int>(impl_->processors_synchronizing_stage.size()) == stage);
impl_->processors_synchronizing_stage.push_back(1);
}
else
++impl_->processors_synchronizing_stage[stage];
impl_->synchronizing = true;
for (int dest = 0; dest < p; ++dest) {
int sync_message = no_new_messages ? -1 : impl_->number_sent_batches[dest];
if (dest != id) {
impl_->number_sent_batches[dest]=0;
MPI_Request request;
MPI_Isend(&sync_message, 1, MPI_INT, dest, msg_synchronizing, impl_->comm,&request);
int done=0;
do {
poll();
MPI_Test(&request,&done,MPI_STATUS_IGNORE);
} while (!done);
}
else { // need to subtract how many messages I should have received
impl_->number_received_batches[id] -=impl_->number_sent_batches[id];
impl_->number_sent_batches[id]=0;
}
}
// Keep handling out-of-band messages until everyone has gotten
// to this point.
while (impl_->processors_synchronizing_stage[stage] <p) {
// with the trigger based solution we cannot easily pass true here
poll(/*wait=*/false, -1, true);
}
// check that everyone is at least here
for (int source=0; source<p ; ++source)
assert(impl_->synchronizing_stage[source] >= stage);
// receive any batches sent in the meantime
// all have to be available already
while (true) {
bool done=true;
for (int source=0; source<p ; ++source)
if(impl_->number_received_batches[source] < 0)
done = false;
if (done)
break;
poll(false,-1,true);
}
#ifndef NO_IMMEDIATE_PROCESSING
for (int source=0; source<p ; ++source)
assert(impl_->number_received_batches[source] >= 0);
#endif
impl_->synchronizing = false;
// Flush out remaining messages
if (impl_->synchronizing_unfinished[stage]==0)
break;
#ifdef NO_IMMEDIATE_PROCESSING
for (process_id_type dest = 0; dest < p; ++dest)
process_batch(dest);
#endif
no_new_messages = true;
for (process_id_type dest = 0; dest < p; ++dest) {
if (impl_->outgoing[dest].headers.size() ||
impl_->number_sent_batches[dest]>0)
no_new_messages = false;
send_batch(dest);
}
}
impl_->comm.barrier/*nomacro*/();
#if 0
// set up for next synchronize call
for (int source=0; source<p; ++source) {
if (impl_->synchronizing_stage[source] != stage) {
std::cerr << id << ": expecting stage " << stage << " from source "
<< source << ", got " << impl_->synchronizing_stage[source]
<< std::endl;
}
assert(impl_->synchronizing_stage[source]==stage);
}
#endif
std::fill(impl_->synchronizing_stage.begin(),
impl_->synchronizing_stage.end(), -1);
// get rid of the information regarding recorded numbers of processors
// for the stages we just finished
impl_->processors_synchronizing_stage.clear();
impl_->synchronizing_unfinished.clear();
for (process_id_type dest = 0; dest < p; ++dest)
assert (impl_->outgoing[dest].headers.empty());
#ifndef NO_IMMEDIATE_PROCESSING
for (int source=0; source<p ; ++source)
assert (impl_->number_received_batches[source] == 0);
#endif
impl_->free_sent_batches();
#ifdef DEBUG
std::cerr << "SYNC: " << process_id(*this) << " completed." << std::endl;
#endif
}
optional<std::pair<mpi_process_group::process_id_type, int> >
probe(const mpi_process_group& pg)
{ return pg.probe(); }
void mpi_process_group::poll_requests(int block) const
{
int size = impl_->requests.size();
if (size==0)
return;
std::vector<MPI_Status> statuses(size);
std::vector<int> indices(size);
while (true) {
MPI_Testsome(impl_->requests.size(),&impl_->requests[0],
&size,&indices[0],&statuses[0]);
if (size==0)
return; // no message waiting
// remove handled requests before we get the chance to be recursively called
if (size) {
std::vector<MPI_Request> active_requests;
std::size_t i=0;
int j=0;
for (;i< impl_->requests.size() && j< size; ++i) {
if (int(i)==indices[j])
// release the dealt-with request
++j;
else // copy and keep the request
active_requests.push_back(impl_->requests[i]);
}
while (i < impl_->requests.size())
active_requests.push_back(impl_->requests[i++]);
impl_->requests.swap(active_requests);
}
optional<std::pair<int, int> > result;
for (int i=0;i < size; ++i) {
std::pair<int, int> decoded = decode_tag(statuses[i].MPI_TAG);
block_type* block = impl_->blocks[decoded.first];
assert (decoded.second < static_cast<int>(block->triggers.size()) && block->triggers[decoded.second]);
// We have a trigger for this message; use it
trigger_receive_context old_context = impl_->trigger_context;
impl_->trigger_context = trc_irecv_out_of_band;
block->triggers[decoded.second]->receive(*this, statuses[i].MPI_SOURCE,
decoded.second, impl_->trigger_context, decoded.first);
impl_->trigger_context = old_context;
}
}
}
optional<std::pair<int, int> >
mpi_process_group::
poll(bool wait, int block, bool synchronizing) const
{
// Set the new trigger context for these receive operations
trigger_receive_context old_context = impl_->trigger_context;
if (synchronizing)
impl_->trigger_context = trc_in_synchronization;
else
impl_->trigger_context = trc_out_of_band;
//wait = false;
optional<boost::mpi::status> status;
bool finished=false;
optional<std::pair<int, int> > result;
do {
poll_requests(block);
// Check for any messages not yet received.
#ifdef PBGL_PROCESS_GROUP_NO_IRECV
if (wait)
status = impl_->comm.probe();
else
#endif
status = impl_->comm.iprobe();
if (status) { // we have a message
// Decode the message
std::pair<int, int> decoded = decode_tag(status.get().tag());
if (maybe_emit_receive(status.get().source(), status.get().tag()))
// We received the message out-of-band; poll again
finished = false;
else if (decoded.first == (block == -1 ? my_block_number() : block)) {
// This message is for us, but not through a trigger. Return
// the decoded message.
result = std::make_pair(status.get().source(), decoded.second);
// otherwise we didn't match any message we know how to deal with, so
// pretend no message exists.
finished = true;
}
}
else
// We don't have a message to process; we're done.
finished=!wait;
} while (!finished);
// Restore the prior trigger context
impl_->trigger_context = old_context;
poll_requests(block);
return result;
}
void synchronize(const mpi_process_group& pg) { pg.synchronize(); }
mpi_process_group mpi_process_group::base() const
{
mpi_process_group copy(*this);
copy.block_num.reset();
return copy;
}
void mpi_process_group::impl::free_sent_batches()
{
typedef std::list<batch_request>::iterator iterator;
iterator it = sent_batches.begin();
int flag;
int result;
while(it != sent_batches.end()) {
result = MPI_Test(&it->request,&flag,MPI_STATUS_IGNORE);
assert(result == MPI_SUCCESS);
iterator next=it;
++next;
if (flag)
sent_batches.erase(it);
it=next;
}
#ifdef PREALLOCATE_BATCHES
for (std::size_t i=0; i< batch_pool.size();++i) {
if(batch_pool[i].request != MPI_REQUEST_NULL) {
result = MPI_Test(&batch_pool[i].request,&flag,MPI_STATUS_IGNORE);
assert(result == MPI_SUCCESS);
if (flag) {
free_batches.push(i);
batch_pool[i].request = MPI_REQUEST_NULL;
batch_pool[i].buffer.resize(0);
}
}
}
#endif
}
void
mpi_process_group::install_trigger(int tag, int block,
shared_ptr<trigger_base> const& launcher)
{
block_type* my_block = impl_->blocks[block];
assert(my_block);
// Make sure we have enough space in the structure for this trigger.
if (launcher->tag() >= static_cast<int>(my_block->triggers.size()))
my_block->triggers.resize(launcher->tag() + 1);
// If someone already put a trigger in this spot, we have a big
// problem.
if (my_block->triggers[launcher->tag()]) {
std::cerr << "Block " << my_block_number()
<< " already has a trigger for tag " << launcher->tag()
<< std::endl;
}
assert(!my_block->triggers[launcher->tag()]);
// Attach a new trigger launcher
my_block->triggers[launcher->tag()] = launcher;
}
std::size_t mpi_process_group::message_buffer_size()
{
return message_buffer.size();
}
void mpi_process_group::set_message_buffer_size(std::size_t s)
{
int sz;
void* ptr;
if (!message_buffer.empty()) {
MPI_Buffer_detach(&ptr,&sz);
assert(ptr == &message_buffer.front());
assert(static_cast<std::size_t>(sz) == message_buffer.size());
}
else if (old_buffer != 0)
MPI_Buffer_detach(&old_buffer,&old_buffer_size);
message_buffer.resize(s);
if (s)
MPI_Buffer_attach(&message_buffer.front(), message_buffer.size());
else if (old_buffer_size)
MPI_Buffer_attach(old_buffer, old_buffer_size);
}
std::vector<char> mpi_process_group::message_buffer;
int mpi_process_group::old_buffer_size=0;
void* mpi_process_group::old_buffer=0;
} } } // end namespace boost::graph::distributed